Imagine biting into a creamy, decadent cheesecake, perfectly portioned and bursting with the comforting flavors of apple crisp. That’s precisely what these Apple Crisp Mini Cheesecakes deliver! As the leaves turn and the air gets crisper, we all crave those warm, cozy desserts, and this recipe is my answer to that craving. It’s a delightful twist on two classic desserts that come together in a symphony of textures and tastes. These aren’t just any cheesecakes; they’re a personal project born out of my love for baking and a desire to create something truly special and shareable.

Over the years, I’ve baked countless cheesecakes, experimenting with every possible flavor combination. This Apple Crisp Mini Cheesecake recipe is a culmination of that experience. I’ve meticulously tested each element to ensure a perfect balance of sweetness, tartness, and spice. The results? Individual cheesecakes that are easy to make, even easier to eat, and guaranteed to impress. Plus, with apple season in full swing, it’s the perfect time to showcase the season’s best produce. Get ready to experience the magic of fall in every bite!
These mini cheesecakes are not only incredibly delicious but also perfect for portion control. The creamy cheesecake filling complements the warm, spiced apple topping and buttery graham cracker crust beautifully. It’s a guaranteed crowd-pleaser for any fall gathering or a cozy night in.
Ingredients: The Building Blocks of Flavor
Let’s dive into the ingredients that make these Apple Crisp Mini Cheesecakes so irresistible. Each component plays a vital role in achieving the perfect texture and taste. Quality ingredients make all the difference in baking.
- For the Crust:
- Graham Cracker Crumbs: 1 ½ cups (about 12 full graham crackers). Graham crackers provide a slightly sweet and subtly spiced base. If you don’t have graham crackers, digestive biscuits or shortbread cookies can be used as a substitute. The texture will vary slightly, but the flavor will still complement the cheesecake.
- Melted Unsalted Butter: 6 tablespoons. Butter binds the crust together and adds richness. Unsalted butter is preferred to control the overall saltiness of the crust. You can substitute with coconut oil for a dairy-free option, but be mindful of the coconut flavor.
- Granulated Sugar: 2 tablespoons. Sugar adds a touch of sweetness to the crust, enhancing the overall flavor profile.
- For the Cheesecake Filling:
- Cream Cheese: 16 ounces (two 8-ounce packages), softened to room temperature. Cream cheese is the star of the cheesecake, providing its signature tang and creamy texture. Ensure it’s fully softened to avoid lumps in the batter. Low-fat cream cheese can be used, but the texture will be less rich and creamy.
- Granulated Sugar: ¾ cup. Sugar sweetens the filling and helps create a smooth texture.
- Sour Cream: ½ cup. Sour cream adds moisture and tanginess to the filling, contributing to its creamy consistency. Greek yogurt can be used as a substitute for a slightly tangier flavor and lower fat content.
- Large Eggs: 2. Eggs bind the filling together and provide structure. Use large eggs for consistent results.
- Vanilla Extract: 1 teaspoon. Vanilla extract enhances the overall flavor of the cheesecake. Use pure vanilla extract for the best flavor.
- For the Apple Crisp Topping:
- Apples: 2 medium (such as Honeycrisp, Gala, or Granny Smith), peeled and diced. Apples provide the signature apple crisp flavor. Honeycrisp apples offer a balance of sweetness and tartness, while Granny Smith apples add a more pronounced tart flavor. The choice is yours!
- All-Purpose Flour: ¼ cup. Flour thickens the apple topping and helps create a crisp texture. Gluten-free all-purpose flour blends work great too!
- Rolled Oats: ¼ cup. Oats add texture and a nutty flavor to the topping.
- Brown Sugar: ¼ cup, packed. Brown sugar adds a caramel-like sweetness and moisture to the topping. Light or dark brown sugar can be used.
- Unsalted Butter: 2 tablespoons, cold and cubed. Cold butter creates pockets of air that result in a crumbly texture.
- Ground Cinnamon: ½ teaspoon. Cinnamon adds warmth and spice to the topping.
- Ground Nutmeg: ¼ teaspoon. Nutmeg complements the cinnamon and adds depth of flavor.
- Lemon Juice: 1 teaspoon. Lemon juice prevents the apples from browning and adds a touch of brightness.
Expert Tips for Perfect Cheesecakes
I’ve baked countless cheesecakes, and I’ve learned a few tricks along the way. Here are my top expert tips to ensure your Apple Crisp Mini Cheesecakes turn out perfectly every time:
- Softened Cream Cheese is Key: Ensure your cream cheese is completely softened to room temperature before mixing. This will prevent lumps and result in a smooth, creamy filling. I usually take mine out of the fridge an hour or two before baking.
- Don’t Overmix the Batter: Overmixing incorporates too much air into the batter, which can cause the cheesecakes to crack. Mix just until the ingredients are combined.
- Bake in a Water Bath (Optional): While not strictly necessary for mini cheesecakes, a water bath can help prevent cracking. Place the muffin tin in a larger baking pan and fill the pan with hot water halfway up the sides of the muffin tin. I personally find that the lower temperature helps them bake more evenly without the hassle of a water bath.
- Cool Slowly: After baking, turn off the oven and crack the door slightly. Let the cheesecakes cool in the oven for an hour before transferring them to the refrigerator. This slow cooling process helps prevent cracking.
- Prepare the Apple Crisp Topping Separately: Mix the topping ingredients just before assembling the cheesecakes to prevent the apples from becoming too soggy.
- Use Quality Spices: Freshly ground spices have a more intense flavor than pre-ground spices. If possible, grind your own cinnamon and nutmeg for the best flavor.
- Taste and Adjust: Before baking, taste the apple crisp topping and adjust the spices and sweetness to your liking. Everyone has different preferences, so don’t be afraid to experiment!
Storage and Substitutions
Want to make these ahead of time? No problem! Here’s how to store your Apple Crisp Mini Cheesecakes and some handy substitutions in case you’re missing an ingredient.
- Storage:
- Refrigeration: Store the baked cheesecakes in an airtight container in the refrigerator for up to 5 days.
- Freezing: For longer storage, freeze the cheesecakes for up to 2 months. Wrap them individually in plastic wrap and then place them in a freezer-safe bag or container. Thaw in the refrigerator overnight before serving.
- Substitutions:
- Cream Cheese: You can use Neufchâtel cheese as a lighter alternative to cream cheese. The texture will be slightly less rich, but the flavor will be similar.
- Sour Cream: Greek yogurt can be used as a substitute for sour cream. It adds a similar tanginess and moisture to the filling.
- Apples: Feel free to experiment with different types of apples. Braeburn, Fuji, or even a mix of different varieties can add unique flavors and textures. Pears can also be used.
- Graham Crackers: Digestive biscuits or shortbread cookies can be used as a substitute for graham crackers in the crust.
- Butter: Coconut oil can be used as a dairy-free alternative to butter in the crust and topping.
- Sugar: Coconut sugar can be used as a refined sugar alternative.
Frequently Asked Questions
Here are some common questions I get about making Apple Crisp Mini Cheesecakes. Don’t see your question here? Leave a comment below!
Can I make these cheesecakes ahead of time?
Yes, absolutely! In fact, I often recommend making them a day in advance. The flavors meld together beautifully as they chill in the refrigerator. Just be sure to store them in an airtight container to prevent them from drying out.
How do I prevent my cheesecakes from cracking?
Cracking can be a common issue with cheesecakes, but there are a few things you can do to minimize it. First, avoid overmixing the batter. Overmixing incorporates too much air, which can cause the cheesecakes to rise and then collapse. Second, cool the cheesecakes slowly. After baking, turn off the oven, crack the door slightly, and let the cheesecakes cool in the oven for an hour before transferring them to the refrigerator.
Can I use different types of apples?
Yes! I encourage you to experiment with different varieties. Honeycrisp and Gala apples are great for their sweetness and crispness, while Granny Smith apples add a more tart flavor. A mix of different types can also add complexity to the flavor profile.
Can I make these gluten-free?
Yes, you can easily make these gluten-free by using gluten-free graham crackers for the crust and a gluten-free all-purpose flour blend in the apple crisp topping. Ensure all your other ingredients are also gluten-free to avoid cross-contamination.
Can I freeze these cheesecakes?
Yes, these cheesecakes freeze well. Wrap them individually in plastic wrap and then place them in a freezer-safe bag or container. They can be stored in the freezer for up to 2 months. Thaw in the refrigerator overnight before serving.
Do I need to use a water bath?
For mini cheesecakes, a water bath isn’t strictly necessary, but it can help prevent cracking. If you want to use a water bath, place the muffin tin in a larger baking pan and fill the pan with hot water halfway up the sides of the muffin tin.
Can I add nuts to the apple crisp topping?
Absolutely! Adding chopped pecans or walnuts to the apple crisp topping would add a delightful crunch and nutty flavor that complements the apples and spices perfectly. Just toss them in with the other topping ingredients before assembling the cheesecakes.

Share the Sweetness of Fall
These Apple Crisp Mini Cheesecakes are more than just a dessert; they’re a celebration of fall flavors in a perfectly portioned treat. From the creamy cheesecake filling to the warm, spiced apple crisp topping and the buttery graham cracker crust, every element works together to create a symphony of taste and texture. They’re incredibly easy to make, and even more delightful to share with family and friends. Whether you’re hosting a fall gathering, looking for a comforting dessert, or simply craving something sweet, these mini cheesecakes are sure to hit the spot.
Now it’s your turn! Try this recipe, experiment with your favorite apple varieties, and let me know how they turn out. Don’t forget to rate the recipe and leave a comment below sharing your experience. I love hearing from you! And if you’re looking for more delicious fall recipes, be sure to check out my Pumpkin Spice Latte Cupcakes, Caramel Apple Blondies and Easy Apple Crumble Pie recipes. Happy baking!
PrintApple Crisp Mini Cheesecakes
Apple Crisp mini cheesecakes recipe Delicious dessert Easy baking
- Prep Time: 30 minutes
- Cook Time: 25 minutes
- Total Time: 55 minutes
- Yield: 12
- Category: Dessert
- Cuisine: American
Ingredients
- 1 ½ cups graham cracker crumbs (about 12 full graham crackers)
- 6 tablespoons melted unsalted butter
- 2 tablespoons granulated sugar
- 16 ounces cream cheese (two 8-ounce packages), softened
- ¾ cup granulated sugar
- ½ cup sour cream
- 2 large eggs
- 1 teaspoon vanilla extract
- 2 medium apples (Honeycrisp, Gala, or Granny Smith), peeled and diced
- ¼ cup all-purpose flour
- ¼ cup rolled oats
- ¼ cup brown sugar, packed
- 2 tablespoons unsalted butter, cold and cubed
- ½ teaspoon ground cinnamon
- ¼ teaspoon ground nutmeg
- 1 teaspoon lemon juice
Instructions
- Preheat oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners.
- For the crust: In a medium bowl, combine graham cracker crumbs, melted butter, and sugar. Press the mixture into the bottom of each muffin liner.
- For the cheesecake filling: In a large bowl, beat cream cheese and sugar until smooth. Beat in sour cream and vanilla extract. Add eggs one at a time, mixing until just combined. Do not overmix.
- For the apple crisp topping: In a separate bowl, combine diced apples, flour, oats, brown sugar, cubed butter, cinnamon, nutmeg, and lemon juice. Mix until the butter is evenly distributed.
- Spoon the cheesecake filling over the graham cracker crusts in each muffin liner. Top each cheesecake with the apple crisp topping.
- Bake for 20-25 minutes, or until the edges are set and the center is slightly jiggly.
- Turn off the oven, crack the door slightly, and let the cheesecakes cool in the oven for 1 hour. Then, transfer to the refrigerator to cool completely for at least 2 hours.
- Serve chilled and enjoy!


